Forskningsprofil: Beräkningsvetenskap, artificiella neuronnätverk, maskininlärning. Tillämpningar inom medicinskt beslutsstöd, hantering av högdimensionell omics-data, överlevnadsanalyser.
Pedagogisk profil: Kursansvarig för “Introduktion till artificiella neuronnätverk och deep learning” (FYTN14/EXTQ40/NTF005F). Föreläsare i “Grundläggande Kvantmekanik” (FYSB22). Mottagare av LUNAs (Lunds Universitets Naturvetenskapliga studentkårs) pris “årets lärare” 2019. Delaktig i utveckling av masterprogram i beräkningsvetenskap.
Publikationer
Visar av publikationer. Sorterade efter år och sen titel.
Precision Medicine for the Delineation of Basal Cell Carcinoma using Unsupervised Machine Learning
Paulina Ibek, Alexander Degener, Magne Stridh, Marcus Tegnér, Patrik Edén, et al.
(2026) Optica Biophotonics Congress 2026
Konferenspaper i proceedingPersonalized digital pipeline for basal cell carcinoma delineation using hyperspectral imaging
Paulina Ibek, Alexander Degener, Magne Stridh, Marcus Tegnér, Patrik Edén, et al.
(2026) Biomedical Optics Express, 17 p.4916-4932
Artikel i vetenskaplig tidskriftMultimodal Gene Expression Deep Learning for Predicting Sentinel Lymph Node Macro-metastasis in Early Breast Cancer: Development and Validation in the SCAN-B Cohort
Daqu Zhang, Johan Staaf, Pär-Ola Bendahl, Looket Dihge, Mattias Ohlsson, et al.
(2026)
Preprint (i preprint-arkiv)Advancing non-invasive melanoma diagnostics with deep learning and multispectral photoacoustic imaging
Aboma Merdasa, Alice Fracchia, Magne Stridh, Jenny Hult, Emil Andersson, et al.
(2025) Photoacoustics, 45
Artikel i vetenskaplig tidskriftA spectroscopy-based machine learning framework on photoacoustic imaging data for automatic 3D delineation of melanoma tumors
Aboma Merdasa, Alice Fracchia, Magne Stridh, Jenny Hult, Emil Andersson, et al.
(2025) Progress in Biomedical Optics and Imaging - Proceedings of SPIE
Konferenspaper i proceedingDeep learning on routine full-breast mammograms enhances lymph node metastasis prediction in early breast cancer
Daqu Zhang, Looket Dihge, Pär-Ola Bendahl, Ida Arvidsson, Magnus Dustler, et al.
(2025) npj Digital Medicine, 8
Artikel i vetenskaplig tidskriftEnhancing the Prediction of Lymph Node Metastasis in Early Breast Cancer Using Deep Learning on Routine Full-Breast Mammograms
Daqu Zhang, Looket Dihge, Pär-Ola Bendahl, Ida Arvidsson, Magnus Dustler, et al.
(2025) Breast Cancer Research
Preprint (i preprint-arkiv)Identification of sentinel lymph node macrometastasis in breast cancer by deep learning based on clinicopathological characteristics
Daqu Zhang, Miriam Svensson, Patrik Edén, Looket Dihge
(2024) Scientific Reports, 14
Artikel i vetenskaplig tidskriftFacilitating clinically relevant skin tumor diagnostics with spectroscopy-driven machine learning
Emil Andersson, Jenny Hult, Carl Troein, Magne Stridh, Benjamin Sjögren, et al.
(2024) iScience, 27
Artikel i vetenskaplig tidskriftA community effort to identify and correct mislabeled samples in proteogenomic studies
Seungyeul Yoo, Zhiao Shi, Bo Wen, SoonJye Kho, Renke Pan, et al.
(2021) Patterns, 2
Artikel i vetenskaplig tidskriftEstablishing strong imputation performance of a denoising autoencoder in a wide range of missing data problems
Najmeh Abiri, Björn Linse, Patrik Edén, Mattias Ohlsson
(2019) Neurocomputing, 365 p.137-146
Artikel i vetenskaplig tidskriftArtificial neural network models to predict nodal status in clinically node-negative breast cancer
Looket Dihge, Mattias Ohlsson, Patrik Edén, Pär Ola Bendahl, Lisa Rydén
(2019) BMC Cancer, 19
Artikel i vetenskaplig tidskriftA multicenter study investigating the molecular fingerprint of psychological resilience in breast cancer patients : Study protocol of the SCAN-B resilience study
Ulrika Axelsson, Lisa Rydén, Per Johnsson, Patrik Edén, Johanna Månsson, et al.
(2018) BMC Cancer, 18
Artikel i vetenskaplig tidskriftIdentification and validation of single-sample breast cancer radiosensitivity gene expression predictors
Martin Sjöström, Johan Staaf, Patrik Edén, Fredrik Wärnberg, Jonas Bergh, et al.
(2018) Breast Cancer Research, 20
Artikel i vetenskaplig tidskriftSingle-Cell Network Analysis Identifies DDIT3 as a Nodal Lineage Regulator in Hematopoiesis.
Cristina Pina, José Teles, Cristina Fugazza, Gillian May, Dapeng Wang, et al.
(2015) Cell Reports, 11 p.1503-1510
Artikel i vetenskaplig tidskriftFinding Risk Groups by Optimizing Artificial Neural Networks on the Area under the Survival Curve Using Genetic Algorithms
Jonas Kalderstam, Patrik Edén, Mattias Ohlsson
(2015) PLoS ONE, 10
Artikel i vetenskaplig tidskriftSOX11 and TP53 add prognostic information to MIPI in a homogenously treated cohort of mantle cell lymphoma - a Nordic Lymphoma Group study.
Lena Nordström, Sandra Sernbo, Patrik Eden, Kirsten Grønbaek, Arne Kolstad, et al.
(2014) British Journal of Haematology, 166 p.98-108
Artikel i vetenskaplig tidskriftTraining artificial neural networks directly on the concordance index for censored data using genetic algorithms.
Jonas Kalderstam, Patrik Edén, Pär-Ola Bendahl, Carina Forsare, Mårten Fernö, et al.
(2013) Artificial Intelligence in Medicine, 58 p.125-132
Artikel i vetenskaplig tidskriftTranscriptional regulation of lineage commitment - a stochastic model of cell fate decisions.
José Teles, Cristina Pina, Patrik Edén, Mattias Ohlsson, Tariq Enver, et al.
(2013) PLoS Computational Biology, 9
Artikel i vetenskaplig tidskriftEnsembles of genetically trained artificial neural networks for survival analysis
Jonas Kalderstam, Patrik Edén, Mattias Ohlsson
(2013) ESANN 2013 proceedings, 21st European Symposium on Artificial Neural Networks, Computational Intelligence and Machine Learning , p.333-338
Konferenspaper i proceedingGene expression profiling indicates that immunohistochemical expression of CD40 is a marker of an inflammatory reaction in the tumor stroma of diffuse large B-cell lymphoma
Karin Fjordén, Patrick Joost, Mats Ehinger, Patrik Edén, Mats Jerkeman, et al.
(2012) Leukemia & Lymphoma, 53 p.1764-1768
Artikel i vetenskaplig tidskriftIdentification of uniquely expressed transcription factors in highly purified B-cell lymphoma samples.
Ulrika Andreasson, Patrik Edén, Carsten Peterson, Carl-Magnus Högerkorp, Mats Jerkeman, et al.
(2010) American Journal of Hematology, 85 p.418-425
Artikel i vetenskaplig tidskriftExpression of P190 and P210 BCR/ABL1 in normal human CD34(+) cells induces similar gene expression profiles and results in a STAT5-dependent expansion of the erythroid lineage
Marcus Järås, Petra Johnels, Helena Ågerstam, Carin Lassen, Marianne Rissler, et al.
(2009) Experimental Hematology, 37 p.367-375
Artikel i vetenskaplig tidskriftGenes associated with the tumour microenvironment are differentially expressed in cured versus primary chemotherapy-refractory diffuse large B-cell lymphoma.
Johan Linderoth, Patrik Edén, Mats Ehinger, Jeanette Valcich, Mats Jerkeman, et al.
(2008) British Journal of Haematology, 141 p.423-432
Artikel i vetenskaplig tidskriftAccounting for one-channel depletion improves missing value imputation in 2-dye microarray data
Cecilia Ritz, Patrik Edén
(2008) BMC Genomics, 9
Artikel i vetenskaplig tidskriftMicroarray-based classification of a consecutive series of 121 childhood acute leukemias: prediction of leukemic and genetic subtype as well as of minimal residual disease status.
Anna Andersson, Cecilia Ritz, David Lindgren, Patrik Edén, Carin Lassen, et al.
(2007) Leukemia, 21 p.1198-1203
Artikel i vetenskaplig tidskriftDiagnostic and prognostic gene expression signatures in 177 soft tissue sarcomas: hypoxia-induced transcription profile signifies metastatic potential.
Princy Francis, Heidi Maria Namlos, Christoph Müller, Patrik Edén, Josefin Fernebro, et al.
(2007) BMC Genomics, 8
Artikel i vetenskaplig tidskriftThe molecular signature of MDS stem cells supports a stem-cell origin of 5q - myelodysplastic syndromes
Lars Nilsson, Patrik Edén, Eleonor Olsson, Robert Månsson, Ingbritt Åstrand-Grundström, et al.
(2007) Blood, 110 p.3005-3014
Artikel i vetenskaplig tidskriftEstrogen receptor beta expression is associated with tamoxifen response in ER alpha-negative breast carcinoma
Sofia Gruvberger, Pär-Ola Bendahl, Lao H Saal, Mervi Laakso, Cecilia Hegardt, et al.
(2007) Clinical Cancer Research, 13 p.1987-1994
Artikel i vetenskaplig tidskriftPulsatile blood flow, shear force, energy dissipation and Murray's Law
Page R Painter, Patrik Edén, Hans-Uno Bengtsson
(2006) Theoretical Biology Medical Modelling, 3
Artikel i vetenskaplig tidskriftGene expression profiles relate to SS18/SSX fusion type in synovial sarcoma
Josefin Fernebro, Princy Francis, Patrik Edén, Åke Borg, Ioannis Panagopoulos, et al.
(2006) International Journal of Cancer, 118 p.1165-1172
Artikel i vetenskaplig tidskriftGene expression profilers and conventional clinical markers to predict distant recurrences for premenopausal breast cancer patients after adjuvant chemotherapy.
Emma Niméus, Cecilia Ritz, Patrik Edén, Anders Johnsson, Mattias Ohlsson, et al.
(2006) European Journal of Cancer, 42 p.2729-2737
Artikel i vetenskaplig tidskriftIntratumor versus intertumor heterogeneity in gene expression profiles of soft-tissue sarcomas.
Princy Francis, Josefin Fernebro, Patrik Edén, Anna Laurell, Anders Rydholm, et al.
(2005) Genes, Chromosomes and Cancer, 43 p.302-308
Artikel i vetenskaplig tidskriftMolecular signatures in childhood acute leukemia and their correlations to expression patterns in normal hematopoietic subpopulations.
Anna Andersson, Tor Olofsson, David Lindgren, Björn Nilsson, Cecilia Ritz, et al.
(2005) Proceedings of the National Academy of Sciences, 102 p.19069-19074
Artikel i vetenskaplig tidskriftGene expression profiling of leukemic cell lines reveals conserved molecular signatures among subtypes with specific genetic aberrations
Anna Andersson, Patrik Edén, David Lindgren, Jens Nilsson, Carin Lassen, et al.
(2005) Leukemia, 19 p.1042-1050
Artikel i vetenskaplig tidskriftPredicting continuous values of prognostic markers in breast cancer from microarray gene expression profiles.
Sofia Gruvberger, Patrik Edén, Markus Ringnér, Bo Baldetorp, Gunilla Chebil, et al.
(2004) Molecular Cancer Therapeutics, 3 p.161-168
Artikel i vetenskaplig tidskriftComparing Functional Annotation Analyses with Catmap
Thomas Breslin, Patrik Edén, Morten Krogh
(2004) BMC Bioinformatics, 5 p.193
Artikel i vetenskaplig tidskrift"Good Old" clinical markers have similar power in breast cancer prognosis as microarray gene expression profilers.
Patrik Edén, Cecilia Ritz, Carsten Rose, Mårten Fernö, Carsten Peterson
(2004) European Journal of Cancer, 40 p.1837-1841
Artikel i vetenskaplig tidskriftExpression profiling to predict outcome in breast cancer: the influence of sample selection
Sofia Gruvberger, Markus Ringnér, Patrik Edén, Åke Borg, Mårten Fernö, et al.
(2003) Breast Cancer Research, 5 p.23-26
Artikel i vetenskaplig tidskriftClassification of Expression Patterns Using Artificial Neural Networks
Markus Ringnér, Patrik Edén, Peter Johansson
(2003) A Practical Approach to Microarray Data Analysis , p.201-215
Kapitel samlingsverkA simple model for the arterial system
Hans-Uno Bengtsson, Patrik Edén
(2003) Journal of Theoretical Biology, 221 p.437-443
Artikel i vetenskaplig tidskriftHigh-energy-physics event generation with PYTHIA 6.1
Torbjörn Sjöstrand, Patrik Edén, Christer Friberg, Leif Lönnblad, Gabriela Miu, et al.
(2001) Computer Physics Communications, 135 p.238-259
Artikel i vetenskaplig tidskriftUsing two jet events to understand hadronization
Gösta Gustafson, Patrik Edén
(1999) European Physical Journal C, 8 p.435–445
Artikel i vetenskaplig tidskriftOn particle multiplicities distribution in three-jet events
Gösta Gustafson, Patrik Edén, Valery Khoze
(1999) European Physical Journal C, 11 p.345–350
Artikel i vetenskaplig tidskriftEnergy and virtuality scale dependence in quark and gluon jets
Gösta Gustafson, Patrik Edén
(1998) Journal of High Energy Physics, 1998
Artikel i vetenskaplig tidskriftHadronization Effects in the Strong Interaction
Patrik Edén
(1998)
Doktorsavhandling (sammanläggning)Baryon production in the string fragmentation picture
Gösta Gustafson, Patrik Edén
(1997) Zeitschrift für Physik C Particles and Fields, 75 p.41-49
Artikel i vetenskaplig tidskrift
COSHE
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