Albertas Dvirnas
Gästforskare
Methods for barcode analysis in optical DNA mapping
Författare
Summary, in English
Paper I presents a combinatorial auction algorithm for contig assembly ussing ODM barcodes as scaffolds.
Paper II concerns mapping of ODM barcodes on the human genome.
Paper III deals with bacterial typing.
Paper IV solves structural variation detection problem for competitive binding barcodes using Hidden Markov Models.
Paper V proposes the use of Sliding Frank-Wolfe methods for sparse-labeled single-frame ODM.
Paper VI extends the Sliding Frank-Wolfe methods from the analysis of single frame barcodes to multi-frame setting, where barcodes over multiple time-frames are averaged to improve the resolution.
Avdelning/ar
- Beräkningsbiologi och biologisk fysik - Har omorganiserats
Publiceringsår
2021-12-13
Språk
Engelska
Fulltext
Dokumenttyp
Doktorsavhandling
Förlag
MediaTryck Lund
Ämne
- Biophysics
Nyckelord
- DNA Barcoding
- Optical Mapping
- Computational Biology
Status
Published
Handledare
- Tobias Ambjörnsson
ISBN/ISSN/Övrigt
- ISBN: 978-91-8039-126-9
- ISBN: 978-91-8039-125-2
Försvarsdatum
25 januari 2022
Försvarstid
10:00
Försvarsplats
Lundmarksalen, Astronomihuset. Join via zoom: https://lu-se.zoom.us/j/64941727808?pwd=RUphOWZQMUhVVitwVFdZNUlwbk5ydz09 (Passcode: 2022)
Opponent
- Jonas Nyvold Pedersen (Associate Professor)