Methods for barcode analysis in optical DNA mapping
Summary, in English
Paper I presents a combinatorial auction algorithm for contig assembly ussing ODM barcodes as scaffolds.
Paper II concerns mapping of ODM barcodes on the human genome.
Paper III deals with bacterial typing.
Paper IV solves structural variation detection problem for competitive binding barcodes using Hidden Markov Models.
Paper V proposes the use of Sliding Frank-Wolfe methods for sparse-labeled single-frame ODM.
Paper VI extends the Sliding Frank-Wolfe methods from the analysis of single frame barcodes to multi-frame setting, where barcodes over multiple time-frames are averaged to improve the resolution.
- DNA Barcoding
- Optical Mapping
- Computational Biology
- Tobias Ambjörnsson
- ISBN: 978-91-8039-126-9
- ISBN: 978-91-8039-125-2
25 January 2022
Lundmarksalen, Astronomihuset. Join via zoom: https://lu-se.zoom.us/j/64941727808?pwd=RUphOWZQMUhVVitwVFdZNUlwbk5ydz09 (Passcode: 2022)
- Jonas Nyvold Pedersen (Associate Professor)