Methods for barcode analysis in optical DNA mapping

Albertas Dvirnas
(2021)
Dissertation

Detection of structural variations in densely-labelled optical DNA barcodes : A hidden Markov model approach

Albertas Dvirnas, Callum Stewart, Vilhelm Müller, Santosh Kumar Bikkarolla, Karolin Frykholm, et al.
(2021) PLoS ONE, 16
Journal article

Cultivation-Free Typing of Bacteria Using Optical DNA Mapping

Vilhelm Müller, My Nyblom, Anna Johnning, Marie Wrande, Albertas Dvirnas, et al.
(2020) ACS Infectious Diseases, 6 p.1076-1084
Journal article

Enzyme-free optical DNA mapping of the human genome using competitive binding

Vilhelm Müller, Albertas Dvirnas, John Andersson, Vandana Singh, Sriram Kk, et al.
(2019) Nucleic Acids Research, 47
Journal article

Optical DNA Mapping Combined with Cas9-Targeted Resistance Gene Identification for Rapid Tracking of Resistance Plasmids in a Neonatal Intensive Care Unit Outbreak

Santosh K. Bikkarolla, Viveka Nordberg, Fredrika Rajer, Vilhelm Müller, Muhammad Humaun Kabir, et al.
(2019) mBio, 10
Journal article

Bacterial identification by optical mapping of genomic DNA in nanofluidic channels

My Nyblom, Vilhelm Müller, Anna Johnning, Marie Wrande, Albertas Dvirnas, et al.
(2019) 23rd International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2019 , p.821-822
Conference paper

Facilitated sequence assembly using densely labeled optical DNA barcodes : A combinatorial auction approach

Albertas Dvirnas, Christoffer Pichler, Callum L. Stewart, Saair Quaderi, Lena K. Nyberg, et al.
(2018) PLoS ONE, 13
Journal article