Victor Olariu

Facilitating clinically relevant skin tumor diagnostics with spectroscopy-driven machine learning

Emil Andersson, Jenny Hult, Carl Troein, Magne Stridh, Benjamin Sjögren, et al.
(2024) iScience, 27
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T-cell commitment inheritance—an agent-based multi-scale model

Emil Andersson, Ellen v. Rothenberg, Carsten Peterson, Victor Olariu
(2024) npj Systems Biology and Applications, 10
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B1 SINE-binding ZFP266 impedes mouse iPSC generation through suppression of chromatin opening mediated by reprogramming factors

Daniel F. Kaemena, Masahito Yoshihara, Meryam Beniazza, James Ashmore, Suling Zhao, et al.
(2023) Nature Communications, 14 p.488-488
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CELLoGeNe - An energy landscape framework for logical networks controlling cell decisions

Emil Andersson, Mattias Sjö, Keisuke Kaji, Victor Olariu
(2022) iScience, 25
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Neural tube patterning : from a minimal model for rostrocaudal patterning toward an integrated 3D model

Max Brambach, Ariane Ernst, Sara Nolbrant, Janelle Drouin-Ouellet, Agnete Kirkeby, et al.
(2021) iScience, 24
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A quantitative model of cellular decision making in direct neuronal reprogramming

Adriaan Merlevede, Emilie M. Legault, Viktor Drugge, Roger A Barker, Janelle Drouin-Ouellet, et al.
(2021) Scientific Reports, 11
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Multi-scale Dynamical Modeling of T Cell Development from an Early Thymic Progenitor State to Lineage Commitment

Victor Olariu, Mary A. Yui, Pawel Krupinski, Wen Zhou, Julia Deichmann, et al.
(2021) Cell Reports, 34
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Kinetic models of hematopoietic differentiation

Victor Olariu, Carsten Peterson
(2019) Wiley interdisciplinary reviews. Systems biology and medicine, 11 p.1424-1424
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A deterministic method for estimating free energy genetic network landscapes with applications to cell commitment and reprogramming paths

Victor Olariu, Erica Manesso, Carsten Peterson
(2017) Royal Society Open Science, 4
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Different reprogramming propensities in plants and mammals: Are small variations in the core network wirings responsible?

Victor Olariu, Julia Nilsson, Henrik Jönsson, Carsten Peterson
(2017) PLoS ONE
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Nanog, Oct4 and Tet1 interplay in establishing pluripotency

Victor Olariu, Cecilia Lövkvist, Kim Sneppen
(2016) Scientific Reports, 6
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A somatic mutation of GFI1B identified in leukemia alters cell fate via a SPI1 (PU.1) centered genetic regulatory network.

Eduardo Anguita, Rajeev Gupta, Victor Olariu, Peter J Valk, Carsten Peterson, et al.
(2016) Developmental Biology, 411 p.277-286
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Dynamic Analysis of Gene Expression and Genome-wide Transcription Factor Binding during Lineage Specification of Multipotent Progenitors

Gillian May, Shamit Soneji, Alex J. Tipping, José Teles, Simon J. McGowan, et al.
(2013) Cell Stem Cell, 13 p.754-768
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Probing the role of stochasticity in a model of the embryonic stem cell - heterogeneous gene expression and reprogramming efficiency

Vijay Chickarmane, Victor Olariu, Carsten Peterson
(2012) BMC Systems Biology, 6
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Prepatterning in the stem cell compartment

Peter D. Tonge, Victor Olariu, Daniel Coca, Visakan Kadirkamanathan, Kelly E. Burrell, et al.
(2010) PLoS ONE, 5
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Modeling the evolution of culture-adapted human embryonic stem cells

Victor Olariu, Neil J. Harrison, Daniel Coca, Paul J. Gokhale, Duncan Baker, et al.
(2010) Stem Cell Research, 4 p.50-56
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Modified variational bayes EM estimation of hidden markov tree model of cell lineages

Victor Olariu, Daniel Coca, Stephen A. Billings, Peter Tonge, Paul Gokhale, et al.
(2009) Bioinformatics, 25 p.2824-2830
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Modelling Stem Cells Lineages with Markov Trees

Victor Olariu, Daniel Coca, Stephen A. Billings, Visakan Kadirkamanathan
(2009) Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 5780 LNBI p.233-243
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