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Photo of Carl Troein

Carl Troein

Researcher

Photo of Carl Troein

An introduction to BioArray software environment

Author

  • Carl Troein
  • Johan Vallon-Christersson
  • Lao Saal

Summary, in English

BioArray Software Environment (BASE) is a web-based software package for storing, searching, and analyzing locally generated microarray data and information surrounding microarray production. The workflow begins in sample management and, optionally, microtiter plate tracking and ends in visualization and analysis of entire experiments. The relative ease with which new analysis plug-ins can be added has given rise to a plethora of third-party tools, and the licensing terms (GNU GPL) encourage local modifications of the software. This introduction to BASE describes the basics of working with the software, both in general and in more detail for the various parts. It also provides some hints about more advanced usage and a section on what is needed to set up your own BASE server. The information is current as of BASE version 1.2.17b, which was released on November 6, 2005.

Department/s

  • Computational Biology and Biological Physics - Undergoing reorganization
  • Breastcancer-genetics

Publishing year

2006

Language

English

Pages

99-119

Publication/Series

Methods in Enzymology

Volume

411

Document type

Journal article review

Publisher

Academic Press

Topic

  • Cancer and Oncology

Status

Published

ISBN/ISSN/Other

  • ISSN: 0076-6879